PUBLICATIONS
Our core members have published more than 100 paper in collaboration with other ELLIS fellows or scholars from outside the unit Jena since 2021.
2024
Early warning of complex climate risk with integrated artificial intelligence
DeepPhenoMem V1.0: Deep learning modelling of canopy greenness dynamics accounting for multi-variate meteorological memory effects on vegetation phenology
A New Post‐Hoc Method to Reduce the Energy Imbalance in Eddy Covariance Measurements
Spatial patterns of vegetation activity related to ENSO in northern South America
Biodiversity and climate extremes: known interactions and research gaps
Flagging inconsistencies in flux tower data
How atmospheric CO2 can inform us on annual and decadal shifts in the biospheric carbon uptake period
Causal hybrid modeling with double machine learning-Applications in carbon flux modeling
Spatial patterns of vegetation activity related to ENSO in northern South America
X-BASE: the first terrestrial carbon and water flux products from an extended data-driven scaling framework, FLUXCOM-X
Double machine learning for causal hybrid modeling--applications in the Earth sciences
Physics Informed Modeling of Ecosystem Respiration via Dynamic Mode Decomposition with Control Input
Changing effects of external forcing on Atlantic–Pacific interactions
Bootstrap aggregation and confidence measures to improve time series causal discovery
Earth virtualization engines (EVE)
Causally‐informed deep learning to improve climate models and projections
Compounding effects in flood drivers challenge estimates of extreme river floods
Interpretability of negative latent heat fluxes from eddy covariance measurements in dry conditions
Intercomparison of global foliar trait maps reveals fundamental differences and limitations of upscaling approaches
AI for Extreme Event Modeling and Understanding: Methodologies and Challenges
A belowground perspective on the nexus between biodiversity change, climate change, and human well‐being
2023
Methodological challenges and new perspectives of shifting vegetation phenology in eddy covariance data
Widespread and complex drought effects on vegetation physiology inferred from space
Causal inference for time series
A joint framework for studying compound ecoclimatic events
Widespread but divergent drought legacy effects on gross primary productivity
Evaluating causal arctic‐midlatitude teleconnections in cmip6
Regime-oriented causal model evaluation of Atlantic–Pacific teleconnections in CMIP6
Improving air quality assessment using physics-inspired deep graph learning
Mixed membership Gaussians
Why Capsule Neural Networks Do Not Scale: Challenging the Dynamic Parse-Tree
Analyzing the Behavior of Cauliflower Harvest-Readiness Models by Investigating Feature Relevances
Discovering causal relations and equations from data
Leaf-level coordination principles propagate to the ecosystem scale
Efficient and Portable Einstein Summation in SQL
Soil heat extremes can outpace air temperature extremes
Publisher Correction: Increasing impact of warm droughts on northern ecosystem productivity over recent decades
Soil heat extremes outpace their atmospheric counterpart
Ten new insights in climate science 2023/2024
Large variability in simulated response of vegetation composition and carbon dynamics to variations in drought‐heat occurrence
The detection and attribution of extreme reductions in vegetation growth across the global land surface
High frequency root dynamics: sampling and interpretation using replicated robotic minirhizotrons
Contrasting drought propagation into the terrestrial water cycle between dry and wet regions
The effect of relative humidity on eddy covariance latent heat flux measurements and its implication for partitioning into transpiration and evaporation
A generalizable normalization for assessing plant functional diversity metrics across scales from remote sensing
Seasonal and Inter-Annual Rainfall Patterns Drive Mediterranean Cork Oak Woodland Carbon Uptake and Sequestration
Shifting vegetation phenology in eddy covariance data: Methodological challenges and new perspectives
Identifying drivers of river floods using causal inference
2022
Widespread increasing vegetation sensitivity to soil moisture
Widespread shift from ecosystem energy to water limitation with climate change
Contrasting biophysical and societal impacts of hydro-meteorological extremes
A spatiotemporal stochastic climate model for benchmarking causal discovery methods for teleconnections
ESMValTool
Optimization for Classical Machine Learning Problems on the GPU
Optimization for Classical Machine Learning Problems on the GPU
Machine Learning, Linear Algebra, and More: Is SQL All You Need?
Combining system modeling and machine learning into hybrid ecosystem modeling
Convexity Certificates from Hessians
Julien Klaus, Niklas Merk, Konstantin Wiedom, Sören Laue, Joachim Giesen
CoRR abs/2210.10430 (2022)
https://doi.org/10.48550/arXiv.2210.10430
Joachim Giesen, Lars Kuehne, Sören Laue
Algorithms for Big Data 2022: 213-228
https://doi.org/10.1007/978-3-031-21534-6_12
Biodiversity loss and climate extremes—study the feedbacks
Miguel D Mahecha, Ana Bastos, Friedrich J Bohn, Nico Eisenhauer, Hannes Feilhauer, Henrik Hartmann, Thomas Hickler, Heike Kalesse-Los, Mirco Migliavacca, Friederike EL Otto, Jian Peng, Johannes Quaas, Ina Tegen, Alexandra Weigelt, Manfred Wendisch, Christian Wirth
Nature 612 (7938), 30-32
https://doi.org/10.1038/d41586-022-04152-y
Javier Pacheco-Labrador, Mirco Migliavacca, Xuanlong Ma, Miguel Mahecha, Nuno Carvalhais, Ulrich Weber, Raquel Benavides, Olivier Bouriaud, Ionut Barnoaiea, David A Coomes, Friedrich J Bohn, Guido Kraemer, Uta Heiden, Andreas Huth, Christian Wirth
Remote Sensing of Environment 280, 113170
https://doi.org/10.1016/j.rse.2022.113170
J Pacheco-Labrador, U Weber, X Ma, MD Mahecha, N Carvalhais, C Wirth, A Huth, FJ Bohn, G Kraemer, U Heiden, M Migliavacca
The International Archives of Photogrammetry, Remote Sensing and Spatial Information Sciences
https://doi.org/10.5194/isprs-archives-XLVI-1-W1-2021-49-2022
Decoupling between ecosystem photosynthesis and transpiration: a last resort against overheating
Christopher Krich, Miguel D Mahecha, Mirco Migliavacca, Martin G De Kauwe, Anne Griebel, Jakob Runge, Diego G Miralles
Environmental Research Letters 17 (4), 044013
https://doi.org/10.1088/1748-9326/ac583e
Wildfire danger prediction and understanding with Deep Learning
Spyros Kondylatos, Ioannis Prapas, Michele Ronco, Ioannis Papoutsis, Gustau Camps‐Valls, María Piles, Miguel‐Ángel Fernández‐Torres, Nuno Carvalhais
Geophysical Research Letters 49 (17), e2022GL099368
https://doi.org/10.1029/2022GL099368
Physics-aware nonparametric regression models for Earth data analysis
Jordi Cortés-Andrés, Gustau Camps-Valls, Sebastian Sippel, Enikő Székely, Dino Sejdinovic, Emiliano Diaz, Adrián Pérez-Suay, Zhu Li, Miguel Mahecha, Markus Reichstein
Environmental Research Letters 17 (5), 054034
http://doi.org/10.1088/1748-9326/ac6762
Chunhui Zhan, René Orth, Mirco Migliavacca, Sönke Zaehle, Markus Reichstein, Jan Engel, Anja Rammig, Alexander J Winkler
Global Change Biology 28 (24), 7313-7326
https://doi.org/10.1111/gcb.16397
Evergreen broadleaf greenness and its relationship with leaf flushing, aging, and water fluxes
Yunpeng Luo, Javier Pacheco-Labrador, Andrew D Richardson, Bijan Seyednasrollah, Oscar Perez-Priego, Rosario Gonzalez-Cascon, M Pilar Martín, Gerardo Moreno, Richard Nair, Thomas Wutzler, Solveig Franziska Bucher, Arnaud Carrara, Edoardo Cremonese, Tarek S El-Madany, Gianluca Filippa, Marta Galvagno, Tiana Hammer, Xuanlong Ma, David Martini, Qian Zhang, Markus Reichstein, Annette Menzel, Christine Römermann, Mirco Migliavacca
Agricultural and Forest Meteorology 323, 109060
https://doi.org/10.1016/j.agrformet.2022.109060
Sinikka Paulus, Tarek S El-Madany, Thomas Wutzler, Arnaud Carrara, Gerardo M Moreno, Markus Reichstein, René Orth, Martin Hertel, Ramon López-Jimenez, Mirco Migliavacca
Revisiting global vegetation controls using multi-layer soil moisture
Wantong Li, Mirco Migliavacca, Matthias Forkel, Sophia Walther, Markus Reichstein, Rene Orth
Authorea Preprints
https://hdl.handle.net/21.11116/0000-000D-3EC5-0
Heatwave breaks down the linearity between sun‐induced fluorescence and gross primary production
David Martini, Karolina Sakowska, Georg Wohlfahrt, Javier Pacheco‐Labrador, Christiaan Van der Tol, Albert Porcar‐Castell, Troy S Magney, Arnaud Carrara, Roberto Colombo, Tarek S El‐Madany, Rosario Gonzalez‐Cascon, María Pilar Martín, Tommaso Julitta, Gerardo Moreno, Uwe Rascher, Markus Reichstein, Micol Rossini, Mirco Migliavacca
New Phytologist 233 (6), 2415-2428
https://doi.org/10.1111/nph.17920
On the potential of Sentinel-2 for estimating Gross Primary Production
Daniel E Pabon-Moreno, Mirco Migliavacca, Markus Reichstein, Miguel D Mahecha
IEEE Transactions on Geoscience and Remote Sensing 60, 1-12
https://doi.org/10.1109/TGRS.2022.3152272
Partitioning of net ecosystem exchange using dynamic mode decomposition and time delay embedding
Maha Shadaydeh, Joachim Denzler, Mirco Migliavacca
Engineering Proceedings 18 (1), 13
https://doi.org/10.3390/engproc2022018013
Contrasting drought legacy effects on gross primary productivity in a mixed versus pure beech forest
Xin Yu, René Orth, Markus Reichstein, Michael Bahn, Anne Klosterhalfen, Alexander Knohl, Franziska Koebsch, Mirco Migliavacca, Martina Mund, Jacob A Nelson, Benjamin D Stocker, Sophia Walther, Ana Bastos
Biogeosciences Discussions 2022, 1-27
https://doi.org/10.5194/bg-19-4315-2022
Uncovering the critical soil moisture thresholds of plant water stress for European ecosystems
Zheng Fu, Philippe Ciais, David Makowski, Ana Bastos, Paul C Stoy, Andreas Ibrom, Alexander Knohl, Mirco Migliavacca, Matthias Cuntz, Ladislav Šigut, Matthias Peichl, Denis Loustau, Tarek S El‐Madany, Nina Buchmann, Mana Gharun, Ivan Janssens, Christian Markwitz, Thomas Grünwald, Corinna Rebmann, Meelis Mölder, Andrej Varlagin, Ivan Mammarella, Pasi Kolari, Christian Bernhofer, Michal Heliasz, Caroline Vincke, Andrea Pitacco, Edoardo Cremonese, Lenka Foltýnová, Jean‐Pierre Wigneron
Global Change Biology 28 (6), 2111-2123
https://doi.org/10.1111/gcb.16050
A view from space on global flux towers by MODIS and Landsat: the FluxnetEO data set
Sophia Walther, Simon Besnard, Jacob Allen Nelson, Tarek Sebastian El-Madany, Mirco Migliavacca, Ulrich Weber, Nuno Carvalhais, Sofia Lorena Ermida, Christian Brümmer, Frederik Schrader, Anatoly Stanislavovich Prokushkin, Alexey Vasilevich Panov, Martin Jung
Biogeosciences 19 (11), 2805-2840
https://doi.org/10.5194/bg-19-2805-2022
Shanning Bao, Andreas Ibrom, Georg Wohlfahrt, Sujan Koirala, Mirco Migliavacca, Qian Zhang, Nuno Carvalhais
Agricultural and Forest Meteorology 326, 109185
https://doi.org/10.1016/j.agrformet.2022.109185
Environment-sensitivity functions for gross primary productivity in light use efficiency models
Shanning Bao, Thomas Wutzler, Sujan Koirala, Matthias Cuntz, Andreas Ibrom, Simon Besnard, Sophia Walther, Ladislav Šigut, Alvaro Moreno, Ulrich Weber, Georg Wohlfahrt, Jamie Cleverly, Mirco Migliavacca, William Woodgate, Lutz Merbold, Elmar Veenendaal, Nuno Carvalhais
Agricultural and Forest Meteorology 312, 108708
https://doi.org/10.1016/j.agrformet.2021.108708
River flooding mechanisms and their changes in Europe revealed by explainable machine learning
Shijie Jiang, Emanuele Bevacqua, Jakob Zscheischler
Hydrology and Earth System Sciences 26, 6339–6359
2021 (21)
The three major axes of terrestrial ecosystem function
Mirco Migliavacca, Talie Musavi, Miguel D Mahecha, Jacob A Nelson, Jürgen Knauer, Dennis D Baldocchi, Oscar Perez-Priego, Rune Christiansen, Jonas Peters, Karen Anderson, Michael Bahn, T Andrew Black, Peter D Blanken, Damien Bonal, Nina Buchmann, Silvia Caldararu, Arnaud Carrara, Nuno Carvalhais, Alessandro Cescatti, Jiquan Chen, Jamie Cleverly, Edoardo Cremonese, Ankur R Desai, Tarek S El-Madany, Martha M Farella, Marcos Fernández-Martínez, Gianluca Filippa, Matthias Forkel, Marta Galvagno, Ulisse Gomarasca, Christopher M Gough, Mathias Göckede, Andreas Ibrom, Hiroki Ikawa, Ivan A Janssens, Martin Jung, Jens Kattge, Trevor F Keenan, Alexander Knohl, Hideki Kobayashi, Guido Kraemer, Beverly E Law, Michael J Liddell, Xuanlong Ma, Ivan Mammarella, David Martini, Craig Macfarlane, Giorgio Matteucci, Leonardo Montagnani, Daniel E Pabon-Moreno, Cinzia Panigada, Dario Papale, Elise Pendall, Josep Penuelas, Richard P Phillips, Peter B Reich, Micol Rossini, Eyal Rotenberg, Russell L Scott, Clement Stahl, Ulrich Weber, Georg Wohlfahrt, Sebastian Wolf, Ian J Wright, Dan Yakir, Sönke Zaehle, Markus Reichstein
Nature 598 (7881), 468-472
https://doi.org/10.1038/s41586-021-03939-9
Gustau Camps-Valls, Devis Tuia, Xiao Xiang Zhu, Markus Reichstein
John Wiley & Sons
https://scholar.google.de/citations?view_op=view_citation&hl=de&user=XCkp5uEAAAAJ&cstart=100&pagesize=100&sortby=pubdate&citation_for_view=XCkp5uEAAAAJ:1PZZLG1Z4vcC
Increasing impact of warm droughts on northern ecosystem productivity over recent decades
David Gampe, Jakob Zscheischler, Markus Reichstein, Michael O’Sullivan, William K Smith, Stephen Sitch, Wolfgang Buermann
Nature Climate Change 11 (9), 772-779
https://doi.org/10.1038/s41558-021-01112-8
Guidelines for studying diverse types of compound weather and climate events
Emanuele Bevacqua, Carlo De Michele, Colin Manning, Anaïs Couasnon, Andreia FS Ribeiro, Alexandre M Ramos, Edoardo Vignotto, Ana Bastos, Suzana Blesić, Fabrizio Durante, John Hillier, Sérgio C Oliveira, Joaquim G Pinto, Elisa Ragno, Pauline Rivoire, Kate Saunders, Karin van der Wiel, Wenyan Wu, Tianyi Zhang, Jakob Zscheischler
Earth's Future 9 (11), e2021EF002340
https://doi.org/10.1029/2021EF002340
Sun-Induced and Active Fluorescence as a Tool to Understand Plants Transpiration
David Martini, Karolina Sakowska, Georg Wohlfahrt, Javier Pacheco-Labrador, Christiaan van der Tol, Tarek El-Madany, Markus Reichstein, Mirco Migliavacca
AGU Fall Meeting Abstracts 2021, B22C-04
https://ui.adsabs.harvard.edu/abs/2021AGUFM.B22C..04M/abstract
Patrick Schratz, Jannes Muenchow, Eugenia Iturritxa, José Cortés, Bernd Bischl, Alexander Brenning
Remote Sensing 13 (23), 4832
https://doi.org/10.3390/rs13234832
A regional Earth system data lab for understanding ecosystem dynamics: An example from tropical South America
Lina M Estupinan-Suarez, Fabian Gans, Alexander Brenning, Victor H Gutierrez-Velez, Maria C Londono, Daniel E Pabon-Moreno, Germán Poveda, Markus Reichstein, Björn Reu, Carlos A Sierra, Ulrich Weber, Miguel D Mahecha
Frontiers in Earth Science 9, 613395
https://doi.org/10.3389/feart.2021.613395
Deepcube: Explainable Ai Pipelines for Big Copernicus Data
Ioannis Papoutsis, Alkyoni Baglatzi, Souzana Touloumtzi, Markus Reichstein, Nuno Carvalhais, Fabian Gans, Gustau Camps-Valls, Maria Piles, Theofilos Kakantousis, Jim Dowling, Manolis Koubarakis, Dimitris Bilidas, Despina-Athanasia Pantazi, George Stamoulis, Christophe Demange, Léo-Gad Journel, Marco Bianchi, Chiara Gervasi, Alessio Rucci, Ioannis Tsampoulatidis, Eleni Kamateri, Tarek Habib, Alejandro Dıaz Bolıvar, Zisoula Ntasiou10, Anastasios Paschalis
https://www.bigdatafromspace2021.org
Method of Moments for Topic Models with Mixed Discrete and Continuous Features
Joachim Giesen, Paul Kahlmeyer, Sören Laue, Matthias Mitterreiter, Frank Nussbaum, Christoph Staudt, Sina Zarrieß
IJCAI 2021: 2418-2424
https://doi.org/10.24963/ijcai.2021/333
EI-Madany Tarek, Arnaud Carrara, Gerardo Moreno, M Pilar Martin, Javier Pacheco-Labrador, Ulrich Weber, Sebastian Sippel, Miguel Mahecha, Markus Reichstein, Mirco Migliavacca
EGU21
https://doi.org/10.5194/egusphere-egu21-6428
Where are global vegetation greening and browning trends significant?
José Cortés, Miguel D Mahecha, Markus Reichstein, Ranga B Myneni, Chi Chen, Alexander Brenning
Geophysical Research Letters 48 (6), e2020GL091496
https://doi.org/10.1029/2020GL091496
A unified vegetation index for quantifying the terrestrial biosphere
Gustau Camps-Valls, Manuel Campos-Taberner, Álvaro Moreno-Martínez, Sophia Walther, Grégory Duveiller, Alessandro Cescatti, Miguel D Mahecha, Jordi Muñoz-Marí, Francisco Javier García-Haro, Luis Guanter, Martin Jung, John A Gamon, Markus Reichstein, Steven W Running
Science Advances 7 (9), eabc7447
https://doi.org/10.1126/sciadv.abc7447
Functional convergence of biosphere-atmosphere interactions in response to meteorological conditions
Christopher Krich, Mirco Migliavacca, Diego Miralles, Guido Kraemer, Tarek S El-Madany, Markus Reichstein, Jakob Runge, Miguel D Mahecha
Biogeosciences 18 (7), 2379-2404
https://doi.org/10.5194/bg-18-2379-2021
Time‐Scale Dependent Relations Between Earth Observation Based Proxies of Vegetation Productivity
Nora Linscheid, Miguel D Mahecha, Anja Rammig, Nuno Carvalhais, Fabian Gans, Jacob A Nelson, Sophia Walther, Ulrich Weber, Markus Reichstein
Geophysical Research Letters 48 (24), e2021GL093285
https://doi.org/10.1029/2021GL093285
Maurizio Santoro, Oliver Cartus, Nuno Carvalhais, Danaë Rozendaal, Valerio Avitabile, Arnan Araza, Sytze De Bruin, Martin Herold, Shaun Quegan, Pedro Rodríguez-Veiga, Heiko Balzter, João Carreiras, Dmitry Schepaschenko, Mikhail Korets, Masanobu Shimada, Takuya Itoh, Álvaro Moreno Martínez, Jura Cavlovic, Roberto Cazzolla Gatti, Polyanna da Conceição Bispo, Nasheta Dewnath, Nicolas Labrière, Jingjing Liang, Jeremy Lindsell, Edward TA Mitchard, Alexandra Morel, Ana Maria Pacheco Pascagaza, Casey M Ryan, Ferry Slik, Gaia Vaglio Laurin, Hans Verbeeck, Arief Wijaya, Simon Willcock
Earth System Science Data 13 (8), 3927-3950
https://doi.org/10.5194/essd-13-3927-2021
Empirical estimates of regional carbon budgets imply reduced global soil heterotrophic respiration
Philippe Ciais, Yitong Yao, Thomas Gasser, Alessandro Baccini, Yilong Wang, Ronny Lauerwald, Shushi Peng, Ana Bastos, Wei Li, Peter A Raymond, Josep G Canadell, Glen P Peters, Rob J Andres, Jinfeng Chang, Chao Yue, A Johannes Dolman, Vanessa Haverd, Jens Hartmann, Goulven Laruelle, Alexandra G Konings, Anthony W King, Yi Liu, Sebastiaan Luyssaert, Fabienne Maignan, Prabir K Patra, Anna Peregon, Pierre Regnier, Julia Pongratz, Benjamin Poulter, Anatoly Shvidenko, Riccardo Valentini, Rong Wang, Grégoire Broquet, Yi Yin, Jakob Zscheischler, Bertrand Guenet, Daniel S Goll, Ashley-P Ballantyne, Hui Yang, Chunjing Qiu, Dan Zhu
National Science Review 8 (2), nwaa145
https://doi.org/10.1093/nsr/nwaa145
Lysimeter based evaporation and condensation dynamics in a Mediterranean ecosystem
Sinikka Paulus, Tarek S El-Madany, René Orth, Anke Hildebrandt, Thomas Wutzler, Arnaud Carrara, Gerardo Moreno, Oscar Perez-Priego, Olaf Kolle, Markus Reichstein, Mirco Migliavacca
Hydrology and Earth System Sciences Discussions 2021, 1-29
https://doi.org/10.5194/hess-26-6263-2022
Revisiting global vegetation controls using multi‐layer soil moisture
Wantong Li, Mirco Migliavacca, Matthias Forkel, Sophia Walther, Markus Reichstein, René OrthGeophysical Research Letters 48 (11), e2021GL092856
https://doi.org/10.1029/2021GL092856
Tarek S El‐Madany, Markus Reichstein, Arnaud Carrara, M Pilar Martín, Gerardo Moreno, Rosario Gonzalez‐Cascon, Josep Peñuelas, David S Ellsworth, Vicente Burchard‐Levine, Tiana W Hammer, Jürgen Knauer, Olaf Kolle, Yunpeng Luo, Javier Pacheco‐Labrador, Jacob A Nelson, Oscar Perez‐Priego, Victor Rolo, Thomas Wutzler, Mirco Migliavacca
Journal of Geophysical Research: Biogeosciences 126 (5), e2020JG006005
https://doi.org/10.1029/2020JG006005
Javier Pacheco-Labrador, Tarek S El-Madany, Christiaan Van der Tol, M Pilar Martin, Rosario Gonzalez-Cascon, Oscar Perez-Priego, Jinhong Guan, Gerardo Moreno, Arnaud Carrara, Markus Reichstein, Mirco Migliavacca
Remote Sensing of Environment 257, 112352
https://doi.org/10.1016/j.rse.2021.112352
Weakly supervised segmentation pretraining for plant cover prediction
Matthias Körschens, Paul Bodesheim, Christine Römermann, Solveig Franziska Bucher, Mirco Migliavacca, Josephine Ulrich, Joachim Denzler
DAGM German Conference on Pattern Recognition, 589-603
https://doi.org/10.1007/978-3-030-92659-5_38
2021
Bottom-up identification of key elements of compound events
Dr. Conrad H. PHILIPP
European Laboratory for Learning and Intelligent Systems (ELLIS)
ELLIS Unit Jena | Project Coordinator